Welcome to the Cytomine main documentation.

It is recommended to start by reading the main Cytomine overview page for a short introduction on Cytomine main concepts

Then the documentation is organized in four main sections below for administrators/operators, developers, data/computer scientists, and end-users.

For testing the Cytomine platform, you can either:

  1. Install a Cytomine instance on your own computer (laptop/desktop), on a server at our own site (intranet-only or worldwide internet access), on in the cloud, or 
  2. Access our demo instance available here: http://demo.cytomine.be/ (see Cytomine User Guide for usernames/passwords or request a personal account).
  3. Contact us for hosting/installation options.


Documentation for software developers:



Documentation for end users (biologists,...):







Cite our work:

(Marée et al., Bioinformatics 2016) DOI: 10.1093/bioinformatics/btw013

Contact us:

E-mail: info@cytomine.org

Github: https://github.com/cytomine (Official version) and  https://github.com/cytomine-uliege/ (ULiège research latest developments)

Main website: http://www.cytomine.org/