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Core configuration

ParameterTypeImportanceExplanationDefault valuePossible values
CORE_URL

URL

MANDATORY

the URL dedicated to the Core of Cytominelocalhost-coreA valid URL
SENDER_EMAIL_SMTP_HOST

CONFIG

IN PROD

email params of the sending account

SENDER_EMIAL_SMTP_PORT

CONFIG

IN PROD

email params of the sending account

SENDER_EMAIL

CONFIG

IN PROD

email params of the sending account

SENDER_EMAIL_PASS

CONFIG

IN PROD

email params of the sending account--
CORE_DEVELOPMENT

PLUGIN

ADVANCED

Set to true to avoid core running in a Docker containerfalsetrue, false

IMS configuration

ParameterTypeImportanceExplanationDefault valuePossible values
IMS_URL1

URL

MANDATORY

the URL dedicated to the first image serverlocalhost-imsA valid URL
UPLOAD_URL

URL

MANDATORY

the URL for image uploadlocalhost-uploadA valid URL
IMS_STORAGE_PATH

PATH

MANDATORY

A pre-existing filesystem path to store images (withtout ending /)/data/images
IMS_BUFFER_PATH

PATH

MANDATORY

A pre-existing filesystem path to IMS buffer (without ending /)/data/_buffer
FAST_DATA_PATH

PATH

MANDATORY

Same as IMS_STORAGE_PATH or a pre-existing filesystem path to store multidimensional images (withtout ending /)/data/images
IMS_DEVELOPMENT

PLUGIN

ADVANCED

Set to true to avoid IMS running in a Docker containerfalsetrue, false
IIP_OFF_URL

URL

ADVANCED

the URL of Cytomine IIP serverlocalhost-iip-cytoA valid URL (can be local)
IIP_CYTO_URL

URL

ADVANCED

the URL of Cytomine IIP serverlocalhost-iip-cytoA valid URL (can be local)
MEMCACHED_PASS

CONFIG

ADVANCED


--
NB_IIP_PROCESS

CONFIG

ADVANCED

Number of simultaneous IIP processes10

Number > 1

Backup plugin configuration

ParameterTypeImportanceExplanationDefault valuePossible values
BACKUP_ENABLED

PLUGIN

MANDATORY

To enable an automatic daily backup, set to truefalsetrue, false
RECEIVER_EMAIL

CONFIG

IF PLUGIN


--
BACKUP_PATH

PATH

IF PLUGIN

A pre-existing filesystem path to store auto backup

Retrieval plugin configuration

ParameterTypeImportanceExplanationDefault valuePossible values
RETRIEVAL_ENABLED

PLUGIN

MANDATORY


truetrue, false
RETRIEVAL_URL

URL

IF PLUGIN

the URL of retrieval serverlocalhost--retrievalA valid URL
RETRIEVAL_PATH

PATH

IF PLUGIN

A pre-existing filesytem path to store retrieval data (without ending /)

RETRIEVAL_PASSWORD

CONFIG

ADVANCED


--
RETRIEVAL_ENGINE

CONFIG

ADVANCED


redisredis, memory

Bioformat plugin configuration

ParameterTypeImportanceExplanationDefault valuePossible values
BIOFORMAT_ENABLED

PLUGIN

MANDATORY

Enable the bioformat convertor to support more formats (VSI, OME-TIFF,...)truetrue, false

Native JPEG2000 support plugin configuration

ParameterTypeImportanceExplanationDefault valuePossible values
IIP_JP2_ENABLED

PLUGIN

MANDATORY


truetrue, false
IIP_JP2_URL

URL

ADVANCED

the URL of IIP server for JPEG2000localhost-iip-jp2000A valid URL (can be local)

IRIS plugin configuration

ParameterTypeImportanceExplanationDefault valuePossible values
IRIS_ENABLED

PLUGIN

MANDATORY


falsetrue, false
IRIS_URL

URL

IF PLUGIN


localhost-irisA valid URL
IRIS_ADMIN_NAME

CONFIG

IF PLUGIN


--
IRIS_ADMIN_ORGANIZATION_NAME

CONFIG

IF PLUGIN


--
IRIS_ADMIN_EMAIL

CONFIG

IF PLUGIN

email address where user will ask permissions for IRIS projects  -
IRIS_ID

CONFIG

ADVANCED

Useful if we are admin of multiple IRIS versionLOCAL_CYTOMINE_IRIS-

Software plugin configuration

ParameterTypeImportanceExplanationDefault valuePossible values
SOFTWARE_ENABLED

PLUGIN

MANDATORY


truetrue, false
SOFTWARE_CODE_PATH

PATH

IF PLUGIN




SOFTWARE_DOCKER_IMAGES_PATH

PATH

IF PLUGIN




JOB_PATH

PATH

IF PLUGIN




SERVER_SSHKEYS_PATH

PATH

IF PLUGIN




RABBITMQ_LOGIN

CONFIG

ADVANCED


router-
RABBITMQ_PASSWORD

CONFIG

ADVANCED


router-
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