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Code Block
languagebash
linenumberstrue
./Miniconda2-latest-Linux-x86_64.sh -b -p $HOME/miniconda2
export PATH="$HOME/miniconda2/bin:$PATH"
conda create -n cytomine python=2.7 shapely opencv scikit-learn pillow joblib
cython
source activate cytomine

In order to avoid having to update you path everytime you come back on you machine, you might want to append the export command (line 2) at the end of the ~/.bashrc file and then run:

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2.3 Install pyxit (located in cytomine-datamining/algorithms/pyxit/)

Cythonize, compile and install Install pyxit:

Code Block
languagebash
linenumberstrue
cd $HOME/Cytomine/Cytomine-python-datamining/cytomine-datamining/algorithms/pyxit/
cython _estimator.pyx
python setup.py build
python setup.py install

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